Aquaculture

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Pangasius catfish are a common aquaculture product from SE Asia.

Aquaculture is defined by the Food and Agriculture Organization of the United Nations as the farming of aquatic organisms (e.g., fish, mollusks, crustaceans, plants) and harvest by an owner who is responsible for the maintenance, protection, and enhancement of the cultivated stock.

Aquaculture is considered the fastest growing food production sector.  In terms of global production, farmed fish accounted for 44.1% of total production from capture fisheries and aquaculture in 2014 (FAO 2016).  While most farmed fish go directly to human consumption, not all wild harvest fisheries do.  Consequently, farmed fish provided more fish to the global food supply than capture fisheries for the first time in 2014 (FAO 2016).

Metamorphosis

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Guest post: Emily Argo

“I think you have a dead fish,” said a concerned aquarium visitor who summoned me to a nearby tank. Pointing to the tank the visitor recounted that they had been watching for a while and had not seen the fish move from it’s position on the bottom. The fish, I am happy to report, was not dead, but alive and well. The visitor had spotted a halibut!

Halibut are flatfishes (this group also includes flounder, sole, turbot, and plaice), they begin their lives as bilaterally symmetrical larvae swimming in the water column, but eventually metamorphose over the course of a few days into a laterally compressed, pancake-like bottom dweller (and a successful sit-and-wait predator). When you think of species that metamorphose (a change in body form between life stages), fish may not be the first type of organism that comes to mind. You probably think of caterpillars and butterflies or tadpoles and frogs, but there are actually over 500 species of fish that metamorphose!

A flounder camouflaging with the bottom (photo credit: Moondigger via Wikimedia Commons [CC BY-SA 2.5]).

One of the most distinct changes that takes place during flatfish metamorphosis is the movement of one eye to the other side of the body, so both eyes are on the same side. This requires reorganization of the bones and muscles in the head of the fish and also impacts the brain and the olfactory system. Additionally, the fish will begin swimming on its side and the coloration on the top side of the body (where both eyes are) will also begin to change helping the fish camouflage with its benthic environment. All these changes are controlled in some way by the thyroid hormone, but there is still a considerable amount to learn about these mechanisms and the evolutionary benefits of these changes.

Smoltification

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Guest post by Emily Argo

Each year adult salmon migrate upstream to spawn (lay eggs) putting into motion their offsprings’ journey from hatching to making their way back to the ocean as juveniles. In addition to being a spectacular event to witness, these migrations also play a central role in ecosystem health. Over 100 different species benefit from the nutrients that the salmon provide! In order for a juvenile salmon to successfully complete their journey to the ocean and continue providing benefits to marine and freshwater ecosystems when they return to as adults, the juveniles must undergo a series of changes through a process called smoltification.

Coho salmon are one of many salmon species, their smolt lifestage is pictured here.

Smoltification occurs in anadromous species prior to entering saltwater. For example, as salmon juveniles move from their freshwater nursery habitats to the ocean, they transition from what scientists call parr to a smolt lifestage. During this transition, they change color, losing their parr bars (dark, vertical bars) and defined countershading, making them appear silvery. Their bodies also change to be more streamlined and buoyant. Even their attitudes change! While parr are typically highly territorial in shallow water, this aggression declines as the smolts move into deeper water and form shoals (large groups). During smoltification salmon smolts get a good whiff of the water to imprint on the odor of their natal stream (stream where they were born) in order to identify it during their return spawning migration as adults. Finally, how the salmon breathe (take oxygen out of the water with their gills) also changes as they go from freshwater to saltwater.

Smoltification does not begin at a specific time in all salmon species, but varies depending on temperature, latitude, size, rate of growth, age, and feeding opportunities or a combination of these factors. Since the changes that take place during smoltification are not necessarily beneficial for remaining in freshwater, the changes will reverse (desmoltification) for fish who are unable to migrate to saltwater. This is sometimes the case when there is a barrier to migration, which can cause fish to remain in freshwater throughout their lifecycle. Luckily for these individuals, salmon are equipped to survive in freshwater as long as they need to, but the inability to migrate will limit their ability to provide important nutrients to these freshwater ecosystems on their return migration as adults.

How many species of salmon can you name?

Countershading

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Guest post by Emily Argo

Countershading, originally described in the late 1800s, is when one side of an animal is dark and the other is light, serving as a form of camouflage. In fish, such as the Atlantic Bluefin Tuna (Thunnus thynnus) pictured, this typically means the ventral side (bottom) is light and the dorsal side (top) is dark. This is useful for fish because the dark dorsal side helps them blend in the with substrate or deeper water below if they are being viewed from above. Then, the lighter dorsal side helps fish blend in with the water (and light backdrop of the sky) above them if you are looking at the from below. Countershading is seen in fish species in coastal and open ocean habitats.

Atlantic Bluefin Tuna are one of many pelagic species that exhibit countershading.

However, some species, such as the Nile catfish (Synodontis batensoda), exhibit reverse countershading where the ventral side is dark and the dorsal side is light. The Nile catfish feeds while swimming upside down in the water column and the reverse countershading helps it camouflage.

While evidence of the mechanisms that drive countershading are lacking, studies suggest that there is an adaptive advantage to countershading in aquatic habitats where the scattering of light through the water column remains relatively uniform throughout the day compared to terrestrial environments (Ruxton et al. 2004).

Can you think of other animals that exhibit countershading?

Reference:

Ruxton, Graeme D., Michael P. Speed, David J. Kelly, What, if anything, is the adaptive function of countershading?, Animal Behaviour, Volume 68, Issue 3, September 2004, Pages 445-451, ISSN 0003-3472, http://dx.doi.org/10.1016/j.anbehav.2003.12.009.
(http://www.sciencedirect.com/science/article/pii/S0003347204001794)

Phenology

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Phenological events triggers Sockeye Salmon migrations (photo credit: USFWS).

Phenology is the study of seasonal or periodic cycles in ecosystems.  It is, essentially, “nature’s calendar.” For fish, phenology is often linked to timing of important life events such as spawning, migrations, and hatching.  These events are triggered by non-biological factors like day length, temperature, and precipitation.  If the timing of the main “cue” shifts, the alteration can have significant implications for the fish populations that have evolved to optimize the timing of their life events with that factor.

Many fall–spawning Pacific Salmon populations (Oncorhynchus spp.), for example, are beginning their freshwater migrations earlier than in the past (e.g. Kovach et al. 2015).  This consistent trend across species and populations strongly suggests that a shared environmental driver (i.e., climate change) is responsible.  Unfortunately, these altered behaviors can be maladaptive – Cooke et al. (2004) found that increased pre-spawn mortality rates – sometimes in excess of 90% – for several stocks of Fraser River sockeye salmon (Oncorhynchus nerka).

 

References

Cooke, S.J., Hinch, S.G., Farrell, A.P., F., L.M., Jones, S.R.M., Macdonald, J.S., Patterson, D.A., Healey, M.C., Van Der Kraak, G., 2004. Abnormal Migration Timing and High en route Mortality of Sockeye Salmon in the Fraser River, British Columbia. Fisheries 29, 22–33. doi:10.1577/1548-8446(2004)29

Kovach, R.P., Ellison, S.C., Pyare, S., Tallmon, D.A., 2015. Temporal patterns in adult salmon migration timing across southeast Alaska. Glob. Chang. Biol. 21, 1821–1833. doi:10.1111/gcb.12829

Panmictic

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Panmictic refers to a random mating strategy, frequently employed by fish, where breeding is just as likely to occur between any two individuals in a population as between any two others.  Mating in this way is not influenced by any any environmental (e.g., geographic proximity), hereditary (e.g., timing of spawning), or social interaction (e.g., polygamous mating systems).

American Eels have a panmictic population.

In a population genetics context, if a species is a panmictic population, there is no genetic evidence of population structure throughout its range.  For example, American Eels (Anguilla rostrata) are catadromous fish found from the Caribbean to Greenland.  However, they all migrate to breed in the same location in the Sargasso Sea so genetic samples from throughout their North American distribution range show a complete lack of genetic differentiation, or complete panmixia.

 

T & E species

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Atlantic Salmon are an endangered species protected by USFWS and NOAA in the U.S.

T & E is an acronym for threatened and endangered.

These are both status metrics for risk of extinction.  Endangered species are considered on the “brink of extinction” throughout their range and threatened species are likely to become endangered in the near future.

The species that are on this list in the United States receive certain protections under the Endangered Species Act of 1973 which recognizes the “esthetic, ecological, educational, historical, recreational, and scientific value [of these species] to the Nation and its people.”  The U.S. Fish and Wildlife Service (USFWS) and the National Oceanic and Atmospheric Administration (NOAA) are mandated to protect the T & E fish species, such as Atlantic Salmon (Salmo salar), among other aquatic and terrestrial species that fall under their jurisdictions.

Endemic species

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Devil's Hole Pupfish is endemic to Devil's Hole, Nevada.

Devil’s Hole Pupfish is endemic to Devil’s Hole, Nevada.

A fish species is considered endemic to a location if that is the only place it occurs naturally.  It may have evolved in that region or over time has become so adapted to that specific environment that it cannot survive elsewhere.  For example, Devil’s Hole Pupfish (Cyprinodon diabolis) is only found in Devil’s Hole, Nevada.  If a species is naturally located in multiple locations, it is considered a native species, but is not an endemic one.  Many endemic species are T&E species, threatened with extinction due to loss or modification of their habitat by agriculture, urbanization, or other human land uses.

 

Invasive species

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Lionfish are non-native and invasive to the Caribbean Sea.

Lionfish are non-native and invasive to the Caribbean Sea.

A fish species is considered invasive if its position in an ecosystem negatively impacts other species.  Generally, these are non-native species which have been introduced into a region by humans (either intentionally or unintentionally) with detrimental consequence to resident fish and other aquatic organisms.  However, some argue that a native species can also be considered invasive if humans have altered its natural ecosystem to the point where the species can throw the whole system into disequilibrium.

For further information, please check out a related post on The Fisheries Blog – Blurred lines: Can climate change-induced range expansion qualify a species as invasive?

Non-native species

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Sea lamprey are non-native to the Laurentian Great Lakes.

Sea lamprey are non-native to the Laurentian Great Lakes (photo credit: Great Lakes Fishery Commission).

A fish species is considered non-native to a location if it does not occur naturally there and only is present as a result of direct or unintentional human introduction.  This does not necessarily mean that these fish cannot thrive in their non-native habitat.  In fact, some fish, such as Sea Lamprey (Petromyzon marinus), can be in decline in their native range but can be considered invasive and even imperil native species in their non-native locations.