Author: abby

Escapement

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This spawned out Chinook Salmon contributes to the escapement estimate for its particular run.

Escapement is a term used in salmon management to mean, quite simply, how many salmon are able to “escape” premature death and complete their full life cycle.  These escapees have run the gauntlet of natural mortality, recreational fishing, commercial fishing, and other life-threatening episodes for the opportunity to spawn in freshwater.  Escapement is estimated by a number of different methods including fish counts (e.g., at a weir or dam viewing window) and carcass surveys (i.e., counting the dead salmon on spawning grounds).  For salmon managers, the amount of escapement for each salmon run informs population estimates and appropriate fishing quotas and other management strategies for future fishing seasons.

Gills

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The underside of a Walleye’s gills (photo credit: USFWS).

Someone may tell you that you look “green around the gills” when you look ill but the expression doesn’t translate well to fish gills…

No matter if a fish is sick or not, fish gills are often red – blood red, to be exact.  That is because gills have blood vessels very close to their external surface.  As the primary mode of gas exchange for most fish (but not all!), gills absorb oxygen from water that passes over them and release carbon dioxide usually facilitated through a counter-current exchange of blood and water flowing in opposite directions.  Gill lamellae provide increased surface area for gas exchange, which is particularly important because there is less dissolved oxygen in water than there is in air.  For fish that breathe air, lungs and skin provide alternative methods for oxygen absorption.

Trophic levels

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Marine trophic levels (diagram credit: University of Waikato).

Trophic levels are a defined by the position of organisms in a food chain or food web.  The different levels help define the flow of energy within an ecosystem.  The lowest trophic level is primary producers, such as algae and phytoplankton, which generate their own energy from the sun via photosynthesis.  Primary consumers, such as herbivorous zooplankton, must eat primary producers as their source of energy.  As a general rule, each trophic level up equates to capturing 10% of the energy from the trophic level below it (e.g., a juvenile fish uses 10% of the energy it gets from eating zooplankton and only 1% of the energy the zooplankton gets from eating phytoplankton).

Many food webs contain organisms, such as fish that eat other fish and zooplankton, that do not fall into simple trophic level constructs.  Stable isotope analyses can be used to infer diet and trophic level for these complex diets by comparing isotopic signatures in tissue from the organisms of interest to those from samples of known origin.  Commonly used isotopes for aquatic ecosystem food web analyses include 13C, 15N and 34S.

Aquaculture

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Pangasius catfish are a common aquaculture product from SE Asia.

Aquaculture is defined by the Food and Agriculture Organization of the United Nations as the farming of aquatic organisms (e.g., fish, mollusks, crustaceans, plants) and harvest by an owner who is responsible for the maintenance, protection, and enhancement of the cultivated stock.

Aquaculture is considered the fastest growing food production sector.  In terms of global production, farmed fish accounted for 44.1% of total production from capture fisheries and aquaculture in 2014 (FAO 2016).  While most farmed fish go directly to human consumption, not all wild harvest fisheries do.  Consequently, farmed fish provided more fish to the global food supply than capture fisheries for the first time in 2014 (FAO 2016).

Metamorphosis

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Guest post: Emily Argo

“I think you have a dead fish,” said a concerned aquarium visitor who summoned me to a nearby tank. Pointing to the tank the visitor recounted that they had been watching for a while and had not seen the fish move from it’s position on the bottom. The fish, I am happy to report, was not dead, but alive and well. The visitor had spotted a halibut!

Halibut are flatfishes (this group also includes flounder, sole, turbot, and plaice), they begin their lives as bilaterally symmetrical larvae swimming in the water column, but eventually metamorphose over the course of a few days into a laterally compressed, pancake-like bottom dweller (and a successful sit-and-wait predator). When you think of species that metamorphose (a change in body form between life stages), fish may not be the first type of organism that comes to mind. You probably think of caterpillars and butterflies or tadpoles and frogs, but there are actually over 500 species of fish that metamorphose!

A flounder camouflaging with the bottom (photo credit: Moondigger via Wikimedia Commons [CC BY-SA 2.5]).

One of the most distinct changes that takes place during flatfish metamorphosis is the movement of one eye to the other side of the body, so both eyes are on the same side. This requires reorganization of the bones and muscles in the head of the fish and also impacts the brain and the olfactory system. Additionally, the fish will begin swimming on its side and the coloration on the top side of the body (where both eyes are) will also begin to change helping the fish camouflage with its benthic environment. All these changes are controlled in some way by the thyroid hormone, but there is still a considerable amount to learn about these mechanisms and the evolutionary benefits of these changes.

Smoltification

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Guest post by Emily Argo

Each year adult salmon migrate upstream to spawn (lay eggs) putting into motion their offsprings’ journey from hatching to making their way back to the ocean as juveniles. In addition to being a spectacular event to witness, these migrations also play a central role in ecosystem health. Over 100 different species benefit from the nutrients that the salmon provide! In order for a juvenile salmon to successfully complete their journey to the ocean and continue providing benefits to marine and freshwater ecosystems when they return to as adults, the juveniles must undergo a series of changes through a process called smoltification.

Coho salmon are one of many salmon species, their smolt lifestage is pictured here.

Smoltification occurs in anadromous species prior to entering saltwater. For example, as salmon juveniles move from their freshwater nursery habitats to the ocean, they transition from what scientists call parr to a smolt lifestage. During this transition, they change color, losing their parr bars (dark, vertical bars) and defined countershading, making them appear silvery. Their bodies also change to be more streamlined and buoyant. Even their attitudes change! While parr are typically highly territorial in shallow water, this aggression declines as the smolts move into deeper water and form shoals (large groups). During smoltification salmon smolts get a good whiff of the water to imprint on the odor of their natal stream (stream where they were born) in order to identify it during their return spawning migration as adults. Finally, how the salmon breathe (take oxygen out of the water with their gills) also changes as they go from freshwater to saltwater.

Smoltification does not begin at a specific time in all salmon species, but varies depending on temperature, latitude, size, rate of growth, age, and feeding opportunities or a combination of these factors. Since the changes that take place during smoltification are not necessarily beneficial for remaining in freshwater, the changes will reverse (desmoltification) for fish who are unable to migrate to saltwater. This is sometimes the case when there is a barrier to migration, which can cause fish to remain in freshwater throughout their lifecycle. Luckily for these individuals, salmon are equipped to survive in freshwater as long as they need to, but the inability to migrate will limit their ability to provide important nutrients to these freshwater ecosystems on their return migration as adults.

How many species of salmon can you name?

Countershading

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Guest post by Emily Argo

Countershading, originally described in the late 1800s, is when one side of an animal is dark and the other is light, serving as a form of camouflage. In fish, such as the Atlantic Bluefin Tuna (Thunnus thynnus) pictured, this typically means the ventral side (bottom) is light and the dorsal side (top) is dark. This is useful for fish because the dark dorsal side helps them blend in the with substrate or deeper water below if they are being viewed from above. Then, the lighter dorsal side helps fish blend in with the water (and light backdrop of the sky) above them if you are looking at the from below. Countershading is seen in fish species in coastal and open ocean habitats.

Atlantic Bluefin Tuna are one of many pelagic species that exhibit countershading.

However, some species, such as the Nile catfish (Synodontis batensoda), exhibit reverse countershading where the ventral side is dark and the dorsal side is light. The Nile catfish feeds while swimming upside down in the water column and the reverse countershading helps it camouflage.

While evidence of the mechanisms that drive countershading are lacking, studies suggest that there is an adaptive advantage to countershading in aquatic habitats where the scattering of light through the water column remains relatively uniform throughout the day compared to terrestrial environments (Ruxton et al. 2004).

Can you think of other animals that exhibit countershading?

Reference:

Ruxton, Graeme D., Michael P. Speed, David J. Kelly, What, if anything, is the adaptive function of countershading?, Animal Behaviour, Volume 68, Issue 3, September 2004, Pages 445-451, ISSN 0003-3472, http://dx.doi.org/10.1016/j.anbehav.2003.12.009.
(http://www.sciencedirect.com/science/article/pii/S0003347204001794)

Phenology

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Phenological events triggers Sockeye Salmon migrations (photo credit: USFWS).

Phenology is the study of seasonal or periodic cycles in ecosystems.  It is, essentially, “nature’s calendar.” For fish, phenology is often linked to timing of important life events such as spawning, migrations, and hatching.  These events are triggered by non-biological factors like day length, temperature, and precipitation.  If the timing of the main “cue” shifts, the alteration can have significant implications for the fish populations that have evolved to optimize the timing of their life events with that factor.

Many fall–spawning Pacific Salmon populations (Oncorhynchus spp.), for example, are beginning their freshwater migrations earlier than in the past (e.g. Kovach et al. 2015).  This consistent trend across species and populations strongly suggests that a shared environmental driver (i.e., climate change) is responsible.  Unfortunately, these altered behaviors can be maladaptive – Cooke et al. (2004) found that increased pre-spawn mortality rates – sometimes in excess of 90% – for several stocks of Fraser River sockeye salmon (Oncorhynchus nerka).

 

References

Cooke, S.J., Hinch, S.G., Farrell, A.P., F., L.M., Jones, S.R.M., Macdonald, J.S., Patterson, D.A., Healey, M.C., Van Der Kraak, G., 2004. Abnormal Migration Timing and High en route Mortality of Sockeye Salmon in the Fraser River, British Columbia. Fisheries 29, 22–33. doi:10.1577/1548-8446(2004)29

Kovach, R.P., Ellison, S.C., Pyare, S., Tallmon, D.A., 2015. Temporal patterns in adult salmon migration timing across southeast Alaska. Glob. Chang. Biol. 21, 1821–1833. doi:10.1111/gcb.12829

Panmictic

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Panmictic refers to a random mating strategy, frequently employed by fish, where breeding is just as likely to occur between any two individuals in a population as between any two others.  Mating in this way is not influenced by any any environmental (e.g., geographic proximity), hereditary (e.g., timing of spawning), or social interaction (e.g., polygamous mating systems).

American Eels have a panmictic population.

In a population genetics context, if a species is a panmictic population, there is no genetic evidence of population structure throughout its range.  For example, American Eels (Anguilla rostrata) are catadromous fish found from the Caribbean to Greenland.  However, they all migrate to breed in the same location in the Sargasso Sea so genetic samples from throughout their North American distribution range show a complete lack of genetic differentiation, or complete panmixia.

 

T & E species

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Atlantic Salmon are an endangered species protected by USFWS and NOAA in the U.S.

T & E is an acronym for threatened and endangered.

These are both status metrics for risk of extinction.  Endangered species are considered on the “brink of extinction” throughout their range and threatened species are likely to become endangered in the near future.

The species that are on this list in the United States receive certain protections under the Endangered Species Act of 1973 which recognizes the “esthetic, ecological, educational, historical, recreational, and scientific value [of these species] to the Nation and its people.”  The U.S. Fish and Wildlife Service (USFWS) and the National Oceanic and Atmospheric Administration (NOAA) are mandated to protect the T & E fish species, such as Atlantic Salmon (Salmo salar), among other aquatic and terrestrial species that fall under their jurisdictions.